Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKQYDSVECPFCDEVSKYEKLA-KIGQGTFGEVFKARHR--KTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLS------NVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLI----TRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTE----QHQLALISQLCGSITPEVWPNVDNYELYEKLEL----VKGQKRKVKDRLKAY--VRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNPATTNQTEFERVF |
| 3RGF Chain:A ((19-346)) | ---------------EDLFEYEGCKVG-----HVYKAKRKDGKDDKDYALKQIE----GTGISMSACREIALLRELKHPNVISLQKVFLSHAD------RKVWLLFDYAEHDLWHIIKFHRASK-----LPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR-----------------VTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ-NPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSD------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RGF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163261 for 2013 contacts (-81.1/contact) +
2D Compatibility (PS) -28891 + (NN) -13736 + (LL) 5688
1D Compatibility (HY) -26000 + (ID) 4850
Total energy: -231050.0 ( -114.78 by residue)
QMean score : 0.559
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