Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLSKITIAS--DAVNVIIEISAN-AEPVKYEFDKELGLLRVDRFLSTAMVYPCNYGFVPNTCAGDGDPVDVLVLTQFPLAPGVLISVRPVGALLTKDEKGKDEKVLAVPVSSVDSYYDHVKNCSDLPKNLLDKITHFFLHYKDLEKEKTVTVGEWVDAEKAKKIVESAIKSRN
3TR4 Chain:A ((8-175))
-----VSAGKGIDDFNVIIEIPANGG-EVKYEYDKELGFLTVDRFMPTSMRYPCNYGFVPSTLAQDGDPLDVLVLTPVPVQPGVLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGWEDKEAAKKEFEASIVRFK
General information:
TITO was launched using:
RESULT:
Template:
3TR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97531 for 1244 contacts (-78.4/contact) +
2D Compatibility (PS) -17872 + (NN) -3396 + (LL) 448
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -140801.0 ( -113.18 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_3TR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR4-query.scw
PDB file :
Tito_Scwrl_3TR4.pdb
: