Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGV---------NLKQTSGPAIEKSGD--------------------------LVAILNDLEPGDVLFIDEIHRMPMA--VEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTRAG---MLSNPLRARFG-ITGHMEYYEENDLTEIIERTADIF--EMKITYEAA---SELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVD-----HEGLDYVDQKILRTMIEMYNGG-PVGLGTLSVNI----------AEERDTVEDMYEPYLIQKGFIMRTRTGRVATDKAYEHLGYQRFDK |
2V1U Chain:A ((18-354)) | ------------------------PDVLPHREAELRRLAEVLAPAL-RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL------------------VSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISE-LDMLGIVKSRVVSRGRYGKTREVSLDADRLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V1U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117975 for 1945 contacts (-60.7/contact) +
2D Compatibility (PS) -28426 + (NN) -6288 + (LL) 2888
1D Compatibility (HY) -7200 + (ID) 2750
Total energy: -159751.0 ( -82.13 by residue)
QMean score : 0.390
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