Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGV---------NLKQTSGPAIEKSGD--------------------------LVAILNDLEPGDVLFIDEIHRMPMA--VEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTRAG---MLSNPLRARFG-ITGHMEYYEENDLTEIIERTADIF--EMKITYEAA---SELARRSRGTPRIANRLLKRVRDYAQIMGDGLIDDNITDKALTMLDVD-----HEGLDYVDQKILRTMIEMYNGG-PVGLGTLSVNI----------AEERDTVEDMYEPYLIQKGFIMRTRTGRVATDKAYEHLGYQRFDK
2V1U Chain:A ((18-354))------------------------PDVLPHREAELRRLAEVLAPAL-RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL------------------VSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISE-LDMLGIVKSRVVSRGRYGKTREVSLDADRLA


General information:
TITO was launched using:
RESULT:

Template: 2V1U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117975 for 1945 contacts (-60.7/contact) +
2D Compatibility (PS) -28426 + (NN) -6288 + (LL) 2888
1D Compatibility (HY) -7200 + (ID) 2750
Total energy: -159751.0 ( -82.13 by residue)
QMean score : 0.390

(partial model without unconserved sides chains):
PDB file : Tito_2V1U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2V1U-query.scw
PDB file : Tito_Scwrl_2V1U.pdb: