Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAGQYYRPSAPELRKDREVALKNMQAFNNED--NSSKRNVILQKWFGA-TGKSIHMEQRFVCDYGCNIYVGENFYANFNQTFLDVCEIRIGDNCMFGPNCQLLTPLHPLDPIERNSGLEYGAPIQIGNNVWLGGGVTILPGVVLGDNVVVGAGSVVTKSFENNVVIAGNPAKIIKKLA
3HJJ Chain:A ((5-189))
KTEKDKMLAGEMYIADDEELVADRVEAKRLTRLYNEAVETGDERRFTLLNQLLGSSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTIE
General information:
TITO was launched using:
RESULT:
Template:
3HJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126351 for 1448 contacts (-87.3/contact) +
2D Compatibility (PS) -20402 + (NN) -11134 + (LL) 0
1D Compatibility (HY) -16000 + (ID) 4600
Total energy: -178487.0 ( -123.26 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_3HJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HJJ-query.scw
PDB file :
Tito_Scwrl_3HJJ.pdb
: