Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEAVSPIRRFTVDGVNVYYEHYQNPG-RQTLVCVHGFLSSAFSFRKVIPLL-RDKYDIIALDLPPFGQSEKSRTFIYTYQNLAKLVIGILEHLQVKQAVLVGHSMGGQISLSAALQKPELFSKVVLLCSSGYLKRSHPTIIFG-TH-IPYFHLYIKRWLSKEGV---MKNLLNVVHD---KSLIDEEMIDGYGRPFQDEQIFKAMTRF-----------IRHREGDLEPEQLKKMNKPALLIWGEEDRIVPMEIGKRLHADLPNSVLYSLGQTGHLVPEERPELISEHIADFIK
3U1T Chain:A ((12-294))-------RTVEVEGATI---AYVDEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGMGDSAKPD-IEYRLQDHVAYMDGFIDALGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMASPIPKLLFHAEPGALAPKPVVDYLSENVPNLEVRFVGAGTHFLQEDHPHLIGQGIADWLR


General information:
TITO was launched using:
RESULT:

Template: 3U1T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1383 -32474 -23.48 -123.95
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -23.48
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.500

(partial model without unconserved sides chains):
PDB file : Tito_3U1T.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3U1T-query.scw
PDB file : Tito_Scwrl_3U1T.pdb: