Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPT----LAGGPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAES-DDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
2AVD Chain:A ((18-229))
--------DSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLG-----DGLTLAFKI
General information:
TITO was launched using:
RESULT:
Template:
2AVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137337 for 1749 contacts (-78.5/contact) +
2D Compatibility (PS) -22549 + (NN) -13110 + (LL) 164
1D Compatibility (HY) -10800 + (ID) 2900
Total energy: -186532.0 ( -106.65 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_2AVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AVD-query.scw
PDB file :
Tito_Scwrl_2AVD.pdb
: