Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDSKVAIVTGAAQGIGQAYAQALAREGASVVVADINADGAAAVAKQIVADGGTAIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAWL---YSNFYGLAKVGVNGLTQQLARELGGMKIRINAIAPGPIDTEATRTVTPAELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
3GAF Chain:A ((9-251))
-LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKP----FDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGGV---
General information:
TITO was launched using:
RESULT:
Template:
3GAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166606 for 2082 contacts (-80.0/contact) +
2D Compatibility (PS) -25867 + (NN) -9817 + (LL) 936
1D Compatibility (HY) -17600 + (ID) 5050
Total energy: -224004.0 ( -107.59 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_3GAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GAF-query.scw
PDB file :
Tito_Scwrl_3GAF.pdb
: