Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTIRLAINGFGRIGRNVLRALYTGHYREQLQVVAINDL-GDAAVNAHLFQYDSVHGHFPGEVEHDAESLRVMGDRIAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVEATVVYGVNHEVLRA-SHRIVSNASCTTNCLAPVAQVLHRELGIEHGLMTTIHAYTNDQNLSDVYH--PDLYRARSATQSMIPTKTGAAEAVGLVLPELAGKLTGLAVRVPVINVSLVDLTVQVARDTSVDEVNRLLREASEGS--PVLGYNTQPLVSVDFNHDPRSSIFDANHTKVSG-RLVKAMAWYDNEWGFSNRMLDSALALAAARD |
| 3CPS Chain:A ((18-353)) | --GTLGINGFGRIGRLVLRACMER---NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSG-DLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKG-DWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CPS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218525 for 2900 contacts (-75.4/contact) +
2D Compatibility (PS) -34465 + (NN) -7979 + (LL) 384
1D Compatibility (HY) -28400 + (ID) 7700
Total energy: -296685.0 ( -102.31 by residue)
QMean score : 0.496
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