Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQE-K--KT-RAPIKNEADNGLLNE-RGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVR-GMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
3BKP Chain:A ((14-192))
------------------LYFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLG---TNGNQFFITLARADVLN-----NAYTLFGKVTGHTLYNLMKFNDLEVGK----EDRPMTPPFIKSVDVL
General information:
TITO was launched using:
RESULT:
Template:
3BKP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66364 for 1214 contacts (-54.7/contact) +
2D Compatibility (PS) -16404 + (NN) -111 + (LL) 2432
1D Compatibility (HY) -14000 + (ID) 2450
Total energy: -96897.0 ( -79.82 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3BKP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BKP-query.scw
PDB file :
Tito_Scwrl_3BKP.pdb
: