Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERNRL--YVDS-----QGGLAYFYPIGFDRARLVVSFPREEARELMADTRGESLRRRLQRFVG--DESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGHALATSLEDRQRFAGVFDTALQGSSRTPEALGGERSYQPVRSPAPLG- |
| 4JY3 Chain:A ((10-379)) | -KTRRAEVA--GGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQ-GSHTPPTYETWMHNKSVSKETFNGLP----WRIMTRSHLHDALVNRARA---LGVDISVNSEAVAADP---VGRLTLQTGEVLEADLIVGADGVGSKVRDSI-GFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPA-------ADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLE----EGSSVEDALVAWETRIRPITDRCQALSGDYAAN-----------RSLSKGNMFTPAALEAAR-YDPLRRVYSWPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JY3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196313 for 3248 contacts (-60.4/contact) +
2D Compatibility (PS) -38161 + (NN) -9178 + (LL) 3820
1D Compatibility (HY) -12800 + (ID) 4050
Total energy: -256682.0 ( -79.03 by residue)
QMean score : 0.423
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