Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLLILTFVAAALAAPFDDDDKIVGGYNCEENSVPYQVSLNS-GYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEV-LEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSWG-DGCAQKNKPGVYTKVYNYVKWIKNTIAANS
2BDG Chain:A ((1-223))
-----------------------IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLLANGR--MPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQA--
General information:
TITO was launched using:
RESULT:
Template:
2BDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123256 for 1932 contacts (-63.8/contact) +
2D Compatibility (PS) -24077 + (NN) -10053 + (LL) 1704
1D Compatibility (HY) -20400 + (ID) 4550
Total energy: -180632.0 ( -93.49 by residue)
QMean score : 0.737
(partial model without unconserved sides chains):
PDB file :
Tito_2BDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BDG-query.scw
PDB file :
Tito_Scwrl_2BDG.pdb
: