Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIVKVTDADFDSKVES-GVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL
2VOC Chain:A ((2-103))
-AIVKATDQSFSAE-TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH-
General information:
TITO was launched using:
RESULT:
Template:
2VOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54562 for 755 contacts (-72.3/contact) +
2D Compatibility (PS) -11382 + (NN) -8798 + (LL) 576
1D Compatibility (HY) -11600 + (ID) 3150
Total energy: -88916.0 ( -117.77 by residue)
QMean score : 0.696
(partial model without unconserved sides chains):
PDB file :
Tito_2VOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VOC-query.scw
PDB file :
Tito_Scwrl_2VOC.pdb
: