Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDP-ANWEILAYLLEHDSTHGLLNKEVRYSNGKLIIGSLEIPVFNS--IKD----LKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQN--QAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTLE-NMVKIMGWYDNEWGYSNRLVDMAQFMYHY |
3H9E Chain:O ((8-337)) | LTVGINGFGRIGRLVLRACME----K-GVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP------DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3H9E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -243700 for 2824 contacts (-86.3/contact) +
2D Compatibility (PS) -33768 + (NN) -2941 + (LL) -28
1D Compatibility (HY) -27200 + (ID) 6550
Total energy: -314187.0 ( -111.26 by residue)
QMean score : 0.519
|
|
|