Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLSE----------------------YRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
3MQG Chain:A ((33-157))
--------------------------------------------------------GAEIGEGCSLGQNV----FVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMS--
General information:
TITO was launched using:
RESULT:
Template:
3MQG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95266 for 726 contacts (-131.2/contact) +
2D Compatibility (PS) -11241 + (NN) -1689 + (LL) 4780
1D Compatibility (HY) -4800 + (ID) 1450
Total energy: -109666.0 ( -151.06 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_3MQG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MQG-query.scw
PDB file :
Tito_Scwrl_3MQG.pdb
: