Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDAKTKYKAKKIKAVFFDIDDTLRVKDTGYMPPSILKVFKALKDKGIVVGIASGRARYGVPKEVQDLNADYCVKLNGAYVKDKDKNIIFHRPIPAEYVEQYKKWADTVGIKYGLAGRHEAVLSDRDDLVNDAIDIVYSDLEVNPDFNKEHDIYQMWTFEDKGDSLHLPEPLDEHLRLIRWHDHSSDVVLKGTSKALGVSKVVEHLGLKPENILVFGDELNDLELFDYAGLAVAMGVSHPEAQKKADFITKKVEEDGILYALEELGLIEKELTFPQVDIENTEGPVAVIKTN-----HGDMTVKLFPDHAPKTVANFIGLA-----KQGYYDGIIFHRIIPDFMIQGGDPT-GTGMGGESIYGESFEDEFSEELYNVRGALSMANAGPNTNGSQFFIVQNTKIPYAKKELERGGWPTPIAELYAGQGGTPHLDRRHSVFGQLVNQSSFEVLDEIAAVETGSQDKPLEDVVILTIEVKE---------- |
| 1CYN Chain:A ((1-178)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG--FGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT-------------------AWLDG--------KHVVFGKVLE--GMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CYN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51213 for 1260 contacts (-40.6/contact) +
2D Compatibility (PS) -16751 + (NN) -5971 + (LL) 19472
1D Compatibility (HY) -10000 + (ID) 3400
Total energy: -67863.0 ( -53.86 by residue)
QMean score : 0.552
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