Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYLTFKHVDFKTDD---KLVLNDINFAIDEGDFVSIVGPSGSGKSTVLKLASGLMSPTAGHIFFDGKDLNQLEPIESRKMISYCFQTPHLFGNTVEDNISFPYHIRHEKVDYRRVDDLFQRFEMDQ----------SYLKQDVKKLSGGEKQRIALIRQLLFEPKVLLLDEVTSALDNHNKAIVEKVIKSLHDKGITILWITHDEEQSRRFANKVLKVVNGSIEAMEVIK
3ZDQ Chain:A ((341-565))
--ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSS-VTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHE
General information:
TITO was launched using:
RESULT:
Template:
3ZDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126023 for 1669 contacts (-75.5/contact) +
2D Compatibility (PS) -22608 + (NN) -2374 + (LL) 268
1D Compatibility (HY) -12800 + (ID) 3850
Total energy: -167387.0 ( -100.29 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3ZDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZDQ-query.scw
PDB file :
Tito_Scwrl_3ZDQ.pdb
: