Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGNTRKKVSVIGAGFTGATTAFLIAQKELA-DVVLVDIPQLENPTKGKALDMLEASPVQGFDAKITGTSNYEDTAGSDIVVITAGIARKPGMSRDDLVSTNEKIMRSVTQEIVKYSPDSIIVVLTNPVDAMTYAVYKESGFPKERVIGQSGVLDTARFRTFVAEELNLSVKDVTGFVLGGHGDDMVPLVRYSYAGGIPLETLIP-------KERIDAIVERTRKGGGEIVNLLGNGSAYYAPAASLTEMVEAILKDQRRVLPTIAYLEGEYGYEGIYLGVPTIVGGNGLEQIIELELTDYERAQLNKSVESVKNVMKVLS
4M1Q Chain:A ((25-335))--TKTSRVVIIGTGAVGSSYAFSMINQNVTDEMVLIDLD-KR-KTEGDAMDLNHGI-PFGAPTKVW-AGDYGDCKSADIVVITAGAAQKPGETRLDLVEKNANIFKGIVDQVMGSGFNGIFIIATNPVDVLAYATWKFSGLPKERVIGSGTILDTARFRFLLSEYFDIDVRNIHGYIMGEHGDTELPVWSQTRIGSEPISRYMDKYKPDGSNKDLDEIFVNVRDAAYHIIERKG--ATHYAIAMGLARLTKAILRNEQSILTVSTLMEGEYDLDDVYIGVPAIVSQKGVERAIEIDLNDEEMKKLHHSSNTLKDVMKPI-


General information:
TITO was launched using:
RESULT:

Template: 4M1Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1660 -40666 -24.50 -134.21
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : -24.50
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.568

(partial model without unconserved sides chains):
PDB file : Tito_4M1Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4M1Q-query.scw
PDB file : Tito_Scwrl_4M1Q.pdb: