Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMENVFDYEDIQLIPAKCIVNSRSECDTSVRLG-GHTFKLPVVPANMQTIIDEKLAISLAENGYFYVMHRFE-PE------TRI---DFIKDMNAR-----------GLFSSISVGVKDEEYEFVRQLAEENLTPEYVTIDIAHGHSNAVIEMIQHLKKHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAAS---KPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGQTIEKDGKLYKEYFGSASEFQKGEKKNVEGKKMHVAHKGSIKDTLIEMEQDLQSSISYAGGTKLNAIRN-VDYVIVKNSIFNGDKY
5AHN Chain:A ((8-467))---ALTFDDVLLIPGYSEVL-PKDVSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMGIEQQAAEVRKVKKH---------TYPLASKDEQGRLRVGAAVGTGADTGERVAALVAAG--VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVP--QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPG--------------------------------------GALSAIVHQLMGGLRAAMGYTGSADIQQMRTQPQFVRITGA-------


General information:
TITO was launched using:
RESULT:

Template: 5AHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1608 -29905 -18.60 -113.27
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -18.60
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.534

(partial model without unconserved sides chains):
PDB file : Tito_5AHN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5AHN-query.scw
PDB file : Tito_Scwrl_5AHN.pdb: