Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAANDI-TDNSTLAHLLKFDSILGRLPCDVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPH-KDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVID-DQAKVVSWYDNEWGYSNRLVDLVTLVGKSL |
| 3PYM Chain:A ((1-331)) | -MVRVAINGFGRIGRLVMRIALSR-----PNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHD-DKHIIVDGKKIATYQER-DPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSST-APMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PYM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188466 for 2888 contacts (-65.3/contact) +
2D Compatibility (PS) -35352 + (NN) -13726 + (LL) 616
1D Compatibility (HY) -28400 + (ID) 8700
Total energy: -274028.0 ( -94.89 by residue)
QMean score : 0.537
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