Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDP--------------------------AAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
4GV8 Chain:A ((3-155))
--NTLQVRLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIE--TGKIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDLSDAIRQYG-TYQINEGDKLAQLVIVPIWTPELKQVEEF----ES------------------
General information:
TITO was launched using:
RESULT:
Template:
4GV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99066 for 852 contacts (-116.3/contact) +
2D Compatibility (PS) -13869 + (NN) -6315 + (LL) -472
1D Compatibility (HY) -9600 + (ID) 2400
Total energy: -131722.0 ( -154.60 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_4GV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GV8-query.scw
PDB file :
Tito_Scwrl_4GV8.pdb
: