Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPFLRRRLAFLSFFWDKIWPAGGEPDHGTPGSLDPNTDPVPTLPAEPCSPFPQLFLALYDFTARCGGELSVRRGDRLCALEEGGGYIFARRLSGQPSAGLVPITHVAKASPETLSDQPWYFSGVSRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHYRVSMAADGSLYLQKGRLFPGLEELLTYYKANWKLIQNPLLQPCMPQKAPRQDVWERPHSEFALGRKLGEGYFGEVWEGLWLGSLPVAIKVIKSANM---KLTDLAKEIQTLKGLRHERLIRLHAVCSGGEPVYIVTELMRKGNLQAFLGTPEGRALRLPPLLGFACQVAEGMSYLEEQRVVHRDLAARNVLVDDGLACKVADFGLARLLKDDI--YSPSSSSKIPVKWTAPEAAN--YRVFSQKSDVWSFGVLLHEVFTYGQCPYEG-MTNHETLQQIMRGYRLPR---PAACPAEVYVLMLECWRSSPEERPSFATLREKLHAIHRCHP |
| 4ITJ Chain:A ((8-290)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NVIKMKSSDFLE--------FGKVSLAFHRTQGLMIMKTVYKGPNCIEHNEALLEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVMEYMEKGNLMHVLKA-E-MSTPLSVKGRIILEIIEGMAYLHGKGVIHKDLKPENILVDNDFHIKIADLGLASFKMWSKLN--------GTLYYMAPEHLNDVNAKPTEKSDVYSFAVVLWAIFA-NKEPYENAIAEQQLIMAIKSGNRPDVDDITEYCPREIISLMKLCWEANPEARPTFPGIEEKFRPFYL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4ITJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148271 for 1886 contacts (-78.6/contact) +
2D Compatibility (PS) -26193 + (NN) -8865 + (LL) 10624
1D Compatibility (HY) -17600 + (ID) 3850
Total energy: -194155.0 ( -102.95 by residue)
QMean score : 0.462
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