Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLSKITIAS--DAVNVIIEISANAEPVKYEFDKELGLLRVDRFLSTAMVYPCNYGFVPNTCAGDGDPVDVLVLTQFPLAPGVLISVRPVGALLTKDEKGKDEKVLAVPVSSVDSYYDHVKNCSDLPKNLLDKITHFFLHYKDLEKEKTVTVGEWVDAEKAKKIVESAIKSRN
3D53 Chain:A ((3-172))
-FIKKIKAKANNNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKVKAETLIKEGIDR--
General information:
TITO was launched using:
RESULT:
Template:
3D53.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109772 for 1283 contacts (-85.6/contact) +
2D Compatibility (PS) -18227 + (NN) -4669 + (LL) 228
1D Compatibility (HY) -16800 + (ID) 4300
Total energy: -153540.0 ( -119.67 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_3D53.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D53-query.scw
PDB file :
Tito_Scwrl_3D53.pdb
: