Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQQYQLPG--HFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
1JE0 Chain:A ((3-234))
---PVHILA-KKGEVAERVLVVGDPGRARLLST-LLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELA-MLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLA-------EELEKSVMDGAKAVLDTL
General information:
TITO was launched using:
RESULT:
Template:
1JE0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174322 for 1901 contacts (-91.7/contact) +
2D Compatibility (PS) -23632 + (NN) -6731 + (LL) 684
1D Compatibility (HY) -11600 + (ID) 3800
Total energy: -219401.0 ( -115.41 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1JE0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JE0-query.scw
PDB file :
Tito_Scwrl_1JE0.pdb
: