Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
1QF9 Chain:A ((7-190))
NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA-NQGKNFLVDGFPRNEENNNSWEENMKDF-VDTKFVLFFDCPEEVMTQRLLKRGESS---------------------------GRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK--
General information:
TITO was launched using:
RESULT:
Template:
1QF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47056 for 1444 contacts (-32.6/contact) +
2D Compatibility (PS) -19856 + (NN) -9515 + (LL) 200
1D Compatibility (HY) -12400 + (ID) 2800
Total energy: -91427.0 ( -63.32 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1QF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QF9-query.scw
PDB file :
Tito_Scwrl_1QF9.pdb
: