Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALEVTDATFVEET-KEGLVLIDFWATWCGPCRMQAPILEQLSQEIDEDELKILKMDVDENPETARQFGIMSIPTLMFKKDGEVVKQVAGVHTKDQLKAIIAELS
1NSW Chain:A ((3-103))
--MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL
General information:
TITO was launched using:
RESULT:
Template:
1NSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53967 for 724 contacts (-74.5/contact) +
2D Compatibility (PS) -10262 + (NN) 2281 + (LL) 276
1D Compatibility (HY) -10400 + (ID) 2550
Total energy: -74622.0 ( -103.07 by residue)
QMean score : 0.719
(partial model without unconserved sides chains):
PDB file :
Tito_1NSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NSW-query.scw
PDB file :
Tito_Scwrl_1NSW.pdb
: