Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKGHALL--KSKHPGDALFAFLRSMVLQWGATDRGL--VEALAGVGI-EISSA----APEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQ-----S-------YNAELAAKVTDVALDGLRANRK
3C2B Chain:A ((14-208))
------------SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGDRVSAPQLADHLEVFAHDLLDV-LAGDVSLALNRLAIGQASR---KLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFD-DAEEAYRSFYGLIVSDLHVRMLLGEAPDKDFSARAKKAVVAFLTLYGTE--
General information:
TITO was launched using:
RESULT:
Template:
3C2B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82800 for 1158 contacts (-71.5/contact) +
2D Compatibility (PS) -18563 + (NN) -14191 + (LL) 1684
1D Compatibility (HY) -1200 + (ID) 1600
Total energy: -116670.0 ( -100.75 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_3C2B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C2B-query.scw
PDB file :
Tito_Scwrl_3C2B.pdb
: