Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAANDITDNSTLAHLLKFDSILGRLPCDVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPH-KDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVID-DQAKVVSWYDNEWGYSNRLVDLVTLVGKSL |
| 4LSM Chain:A ((16-346)) | -TIKIGINGFGRIGRMVFRAAQHR-----NDIEIVGINDLLDADYMAYMLKYDSTHGRYGGMVEVR-EGALVVNGKKIRVTSER-DPANLKWNEVGAVVVVESTGLFLTDETARKHIQAGAKKVVMTGPPKDDTPMFVMGVNNTMYK-GQEIVSNASCTTNCLAPLAKIIHEKFGIVEGLMTTVHATTATQKTVDGPSQKDWRGGRGAAQNIIPSATGAAKAVGKVIPALNGRLTGMAFRVPTPNVSVVDLTARLERPATYEQICAAIKAASEGELKGILGYTEDEVVSTDMNGVALTSVFDVKAGISLNDRFVKLISWYDNETGYSHKVLDLVAYISAH- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4LSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -181683 for 2891 contacts (-62.8/contact) +
2D Compatibility (PS) -35060 + (NN) -12250 + (LL) 368
1D Compatibility (HY) -28400 + (ID) 8050
Total energy: -265075.0 ( -91.69 by residue)
QMean score : 0.526
|
|
|