Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MSKLQLRAVVADRR------LDVEFSVSAGEVLAVLGPNGAGKSTALHVIAGLLRPDAGLVRLGDRVLTDTEAGVNVATHDRRVGLLLQDPLLFPHLSVAKNVAFGPQCRRGMFGSGRARTRASALRWLREVNAEQFADRKPRQLSGGQAQRVAIARALAAEPDVLLLDEPLTGLDVAAAAGIRSVLRSVVARSGCAVVLTTHDLLDVFTLADRVLVLESGTIAEIGPVADVLTAPRSRFGAR-IAGVNLVNGTIGPDGSLRTQSGAHWYGTPVQ---DLPTGHEAIAVFPPTAVAVYPEPPHGSPRNIVGLTVAEVDTRGPTVLVRGHDQPGGAPGLAACITVDAATELRVAPGSRVWFSVKAQEVALHPAPHQHASS |
| 1Z47 Chain:A ((11-355)) | GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP------PQKRNVGLVFQNYALFQHMTVYDNVSFGLREK----RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIGESNVWTRAV-------QNGRIEVAGAALPVDPAVSEGSEVAVVVRPKDVELQPASERE-----AHAQVVRSAFKGSYSACWIRTKDGE------VWEVHVPSADRHRWSPGAWVHMNVTRWFIFPR------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Z47.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -223072 for 2658 contacts (-83.9/contact) +
2D Compatibility (PS) -36646 + (NN) -17416 + (LL) 884
1D Compatibility (HY) -20800 + (ID) 5150
Total energy: -302200.0 ( -113.69 by residue)
QMean score : 0.461
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