Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWEGLWIATAVIAALVVIAALTLGLVLYRRRRISLSPRPERGVVDRSGGYTASSGITFSQTPTTQPAERIDTSGLPAVGDDATVPRDAPKRTIADVHLPEFEPEPQAPEVPEADAIAPPEGRLERLRGRLARSQNALGRGLLGLIGGGDLD----EDSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNVR---TE-ADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDAVDK-GIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRRASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG |
| 1LS1 Chain:A ((1-293)) | -------------------------------------------------------------------------------------------------------------------------MFQQLSARLQEAIGRL-------RGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEAR-----LPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESI-RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL----GPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAG------GLEPFYPERLAGRILG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LS1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -191126 for 2378 contacts (-80.4/contact) +
2D Compatibility (PS) -30644 + (NN) -15710 + (LL) 7988
1D Compatibility (HY) -16800 + (ID) 5000
Total energy: -251292.0 ( -105.67 by residue)
QMean score : 0.570
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