Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDMFQKVEKIGEGTYGVVYKAKNRE--TGQLVALKKIRLDLEMEGVPSTAIREISLLKELKHPNIVRLLDVV--HNERKLYLVFEFLSQDLKKYMDS-----TPGSELPLHLIKSYLFQLLQGVSFCHSHRVIHRDLKPQNLLI----NELGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGSKFYTTAVDIWSIGCIFAEMVTRKALFPGDSE----IDQLFRIFRMLGTPSEDTWPGVTQLPDYKGSFPKWTR---------KGLEEIVPNLEPEGRDLLMQLLQYDPSQRITAKTALAHPYFSSPEPSPAARQYVLQRFRH |
4F6U Chain:A ((27-340)) | -------CKVGRGTYGHVYKAKRKDGKDDKDYALKQIE----GTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASK---VQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGF--------------VVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQENPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F6U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -154769 for 1942 contacts (-79.7/contact) +
2D Compatibility (PS) -27402 + (NN) -10860 + (LL) 1988
1D Compatibility (HY) -29200 + (ID) 5750
Total energy: -225993.0 ( -116.37 by residue)
QMean score : 0.490
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