Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRIQRNKIKVEIKKLSHGKDLPLPCYATMQSAGMDLYAALGNSIVLNPLERLLIPTGIVIVIPNGFEGQIRPRSGLAAKYGITVLNSPGTIDSDYRGEVKVCLINLSNQPYEIKRGDRIAQILIAPVFR-VIWDDAERLCTEETERSAGGFGSSGR
3P48 Chain:A ((9-133))
----------LKIQLR--SASATVPTKGSATAAGYDIYASQD--ITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTG--AGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSL--E--------------
General information:
TITO was launched using:
RESULT:
Template:
3P48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83836 for 857 contacts (-97.8/contact) +
2D Compatibility (PS) -13357 + (NN) -5860 + (LL) 684
1D Compatibility (HY) -6800 + (ID) 2200
Total energy: -111369.0 ( -129.95 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3P48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P48-query.scw
PDB file :
Tito_Scwrl_3P48.pdb
: