Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTN-----KGNITLELFYKDAPQAVSNFVTLAKE-----------GFYNGLNFHRVIAGFVAQGGCPYG-TGTGGP---EHRIKCEVAHNPNKHQ-RGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESLSVLDKIKQGDIIESVVFSPSL
1IHG Chain:A ((9-172))
----------KPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDEN--FHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKG--MGVAKILENVEVKGEKPAKLCV
General information:
TITO was launched using:
RESULT:
Template:
1IHG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67172 for 1095 contacts (-61.3/contact) +
2D Compatibility (PS) -14988 + (NN) -3830 + (LL) 1000
1D Compatibility (HY) -4800 + (ID) 2450
Total energy: -92240.0 ( -84.24 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1IHG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IHG-query.scw
PDB file :
Tito_Scwrl_1IHG.pdb
: