Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKHIVIIGGGLSGLAAAYELQKTHPNY--TWELVEKDEKLGGKFETVKR-DGFLIEKGPDSFLAR---KPAGVGLVKDLGLEDKLIANAT-----GRSYIYHQKALHPIPEGSVMGIPTDKEALLAS-TLVSEIGKARALQEPTMERNNQERDQALGDFFEARFGKELVKTIIEPLLSGIYAGDIYKMSLRATFPQFEQTVKKYGNLMDGLKESSMQTTG--------TKATIGAFRTLEGGLDALPKAIAAALPKENL--HTAKQATEIVKKN-NAYEISFADGDKMEADGVIIAATHDALIHLLAETT-T--EPFAGQPLTTLATVSLAYNEQDVPILPDGTGYLVARTAPYKTTACTWVQKKWPHMVP-KNKMLLRGFVGKAGETWLEQ----ASDEAIVSAVLRDYAEIMDLHAAPLFYEVSRMKSAMPQYLVNHQDRLKQLKKNIKTDYPGVFFAGMSYEGVGIPDCIAGAQTAAKELVDYLEEV |
| 3NKS Chain:A ((2-474)) | GRTVVVLGGGISGLAASYHLSRA--PCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTG--------LRG---PSPPFSKPLFWAGLRELTKPR-GKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLG-----QPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHLP--VQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSVLGTE--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -200937 for 3731 contacts (-53.9/contact) +
2D Compatibility (PS) -46477 + (NN) -12781 + (LL) 1888
1D Compatibility (HY) -23200 + (ID) 5600
Total energy: -287107.0 ( -76.95 by residue)
QMean score : 0.507
|
|
|