Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTN-RRPAEEIIKHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFI-KQKVLQGTSLRDVSLSVLNAKGKPIITHQMDMIFTHFGVSGPAALRCSMFVLRELKKTGAGTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKADLEETAEYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDINGYTGGYNITCALVTGHTAGAYAAEVSNA |
| 3V76 Chain:A ((28-417)) | --QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFL---SGNPHFCKSALARYRPQDFVALVERHGIGWHEKTLGQLFC-DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA-SGFRVTTSAG-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLPVVETRPALVPLTLDQAQLAKLGALAGVAADAE---ARF--G--KAAFREAVLITHRGLSGPAILQISSYWREG--------EEIVLRLMPDIDIASILK---GMRRANGRQAVQTALADILPRRLAQFFADEAKLTG-RMLADLSDKTIDALASSIQVWAVKPAGSEGYRTAEVTLGGVDTRALDSRTMQAKEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQDV------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V76.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -242833 for 3494 contacts (-69.5/contact) +
2D Compatibility (PS) -41752 + (NN) -10205 + (LL) 1780
1D Compatibility (HY) -24000 + (ID) 5950
Total energy: -322960.0 ( -92.43 by residue)
QMean score : 0.511
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