Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANA-GPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDG--------RHTVFGHVIEGMDVVDEIANLPTGMQ--DKPVNDVVIEKINIK
3S6M Chain:A ((3-167))
-------------GSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ--KPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNE---------------------------FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGS-HQDVPNDDVVIEKAVVV
General information:
TITO was launched using:
RESULT:
Template:
3S6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63453 for 1252 contacts (-50.7/contact) +
2D Compatibility (PS) -16062 + (NN) -6389 + (LL) 2256
1D Compatibility (HY) -7200 + (ID) 3050
Total energy: -93898.0 ( -75.00 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_3S6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S6M-query.scw
PDB file :
Tito_Scwrl_3S6M.pdb
: