Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1RL4 Chain:A ((10-171))
-----------------KIVKYPDPILRRRSEEVT-NFDDNLKRVVRKMFDIMY------------ESKGIGLSAPQVNISKRIIVWN-------------------RIFINPSIVEQSLVKL--KLIEGCLSFPG-IEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELI
General information:
TITO was launched using:
RESULT:
Template:
1RL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56677 for 1152 contacts (-49.2/contact) +
2D Compatibility (PS) -15687 + (NN) -884 + (LL) 3340
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -85908.0 ( -74.57 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_1RL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL4-query.scw
PDB file :
Tito_Scwrl_1RL4.pdb
: