Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNRKGNLSMTTQLQHLTLPEDIQQKLLSYKEQPISPEFQSLIGTSGYEAEDEAILFDAIIALAMGKNVLLKGPTGSGKTKLAETLSSY---FHKPMHSVNCS---VDLDAEALVGYKTIENQSGQATIEFVSGPVTKAMKEGHFLYIDEINMAKPETLPILNGVLDYRKMMTNPFTGEVIRAKSGFGVIAAINEGYVGTVP---LNEALKNRFVII------------DVPYIKGELLKQVLM---------SQSALKDEK------LIDRFITLSSDLIVQANNGQVSEEAASIRALIDTCDLAAYIPPRRAIERGIVEKLDDDREKAAVRNIAETLFE-----
1OJL Chain:A ((3-304))-HMIGS----------------------------SPAMQHLLNEIAMVAPSDA-------------TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTKRR------EGRFVEA--DGGTLFLDEIGDISPLMQVRLLRAIQEREVQR---VGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAYSGEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR


General information:
TITO was launched using:
RESULT:

Template: 1OJL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1184 18598 15.71 74.09
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : 15.71
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.377

(partial model without unconserved sides chains):
PDB file : Tito_1OJL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1OJL-query.scw
PDB file : Tito_Scwrl_1OJL.pdb: