Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSGQMFKVEIVTRPANFEKLKQELGKIGVTSLTFSNVHGCGLQKAHTELYRGVKIESNVYERLKIEIVVSKVPVDQVTETAKRVLKTGSPGDGKIFVYEISNTINIRTGEEGPEAL
2J9C Chain:A ((2-114))---SMKKVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEGKEAL


General information:
TITO was launched using:
RESULT:

Template: 2J9C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 439 -40538 -92.34 -358.74
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.81

3D Compatibility (PKB) : -92.34
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.397

(partial model without unconserved sides chains):
PDB file : Tito_2J9C.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2J9C-query.scw
PDB file : Tito_Scwrl_2J9C.pdb: