Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGL-SVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKG-HALLKSKHPGDALFAFLRSMVLQWGATDRGLVEALAGVG----IEIS-SAAPEAEADFLDLLTDLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQS---------YNAELAAKVTDVALDGLRANRK
4W97 Chain:A ((5-197))
--------AGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEA-IEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITK---
General information:
TITO was launched using:
RESULT:
Template:
4W97.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82849 for 1266 contacts (-65.4/contact) +
2D Compatibility (PS) -19579 + (NN) -14476 + (LL) 820
1D Compatibility (HY) -10000 + (ID) 1700
Total energy: -127784.0 ( -100.94 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_4W97.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W97-query.scw
PDB file :
Tito_Scwrl_4W97.pdb
: