Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLSAAVVAIDGPAGTGKSSVSRRLARELGARFLDTGAMYRIVTLAVLRAGADPSDIAAVETIASTVQMSLGY-DPDGDSCYLAGEDVSVEIRGDAVTRAVSAVSSVPAVRTRLVELQRTMAEGPGSIVVEGRDIGTVVFPDAPVKIFLTASAETRARRRNAQNVAAGL-ADDYDGVLADVRRRDHLDSTRAVSPLQAAGDAVIVDTSDMTEAEVVAHLLELVTRRSEAVR
2H92 Chain:A ((3-218))
-----AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTE----DFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELA-AEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQL-RGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQI-----
General information:
TITO was launched using:
RESULT:
Template:
2H92.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126356 for 1743 contacts (-72.5/contact) +
2D Compatibility (PS) -23378 + (NN) -14837 + (LL) 1432
1D Compatibility (HY) -16000 + (ID) 4050
Total energy: -183189.0 ( -105.10 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2H92.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H92-query.scw
PDB file :
Tito_Scwrl_2H92.pdb
: