Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPGRTSIGVKIRDKVQDKVIAITGGARGIGLATAAALHNLGAKVAIGDIDEAMAKESGADLDLDMYGKLDVTDPDSFSGFLDAVERQLGPIDVLVNNAGIMPVGRIVDEPDPVTRRILDINVYGVILGSKLAAQRMVPRGRGHVINVASLAGEIYAVGVATYCASKHAVVAFTDSARLEYRSAGVKFSMVLPSFVNTELIAGTG-G--------IKGFKNAEPADIADAIVGLIVHPKPRVRVTKAAGSMIVAQRFMPRQVSEGLNRLLGGEHVFTDDVDMEKRRTYEARARGEE |
2D1Y Chain:A ((2-230)) | ------------GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI-GGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIA-RRDWEDLHALR-RLGKPEEVAEAVLFLASEK---------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D1Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133013 for 1866 contacts (-71.3/contact) +
2D Compatibility (PS) -22381 + (NN) -2684 + (LL) 4836
1D Compatibility (HY) -8400 + (ID) 3250
Total energy: -164892.0 ( -88.37 by residue)
QMean score : 0.537
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