Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSLDLTGRTAIITGASRGIGLAIAQQLAAAGAHVVLTARRQEAADEAAAQV---GDRALGVGAHAVDEDAARRCVDLTLERFGSVDILINNAGTNPAYGPLLEQDHARFAKIFDVNLWAPLMWTSLVVTAWMGEHGGAVVNTASIGGMHQSPAMGMYNATKAALIHVTKQLALELSP-RIRVNAICPGVVRTRLAEALWKDHEDPLAATIALGRIGEPADIASAVAFLVSDAASWITGETMIIDGGLLLGNALGFRAAPSTEH
4URF Chain:A ((2-246))
----LLEGKTALVTGAGNGIGRTIALTYAAEGANVVVSDISDEWGRETLALIEGKGGKAVFQHADTAHPEDHDELIAAAKRAFGRLDIACNNAGISGEFTPTAETTDAQWQRVIGINLSGVFYGVRAQIRAMLETGGGAIVNISSIAGQIGIEGITPYTAAKHGVVGLTKTVAWEYGSKGIRINSVGPAFINTTLVQNVPLETRRQLEQMHALRRLGETEEVANLVAWLSSDKASFVTGSYYAVDGGYL---------------
General information:
TITO was launched using:
RESULT:
Template:
4URF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164727 for 2161 contacts (-76.2/contact) +
2D Compatibility (PS) -25882 + (NN) -7952 + (LL) 1032
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -217479.0 ( -100.64 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4URF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4URF-query.scw
PDB file :
Tito_Scwrl_4URF.pdb
: