Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKRASLLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADD-KIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDN-FHKGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEATIC-NDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
| 3GPD Chain:R ((1-334)) | ------------------------------------------------------------------------------------------------------------GKVKVGVDGFGRIGRLVTRAAFNSGKV----DIVAIND---PFIDLHYMVYMFQYDSTHGKFHGTVKAE--DGKLVIDGKAITIFQERDPENIKWGDAGTA--YVVESTGVFTTMEKAGAHLK-GGAKRIVISAPSADAP-MFVMGVNHFKYANS-LKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASE-GPLKGILGYTEDEVVSD-DFNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFGYSERVVDLMAHMASKE------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202002 for 2956 contacts (-68.3/contact) +
2D Compatibility (PS) -36484 + (NN) -20436 + (LL) 8296
1D Compatibility (HY) -18400 + (ID) 6500
Total energy: -275526.0 ( -93.21 by residue)
QMean score : 0.456
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