Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGNRGVVYLGPGKVEVQNIPYPKMQDPQGRQIDHGVILRVVSTNICGSDQHMVRGRTT----APEGLVLGHEITGEVVEIGRGVETMKIGDLVSVPFNVACGHCRTCKEQHTGVCLTVNPARAGGAYGYVDMGGWVGGQAEYVLVPYADFNLLKLPNREAAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASARLLGAAVVIVGDVNPTRLAHAKKQGFEIADL--SKDT---PLHEQIAALLGEPEVDCAVDAVGFEARGHGHSGSQQEAPATVLNSLMGITRVAGKIGIPGLYVTEDPGAVDAAAKHGALSIRFGLGWAKSHSFHTGQTPVMKYNRQLMQAIMWDRIKIADIVGVEVITLDDAPKGYGEFDAG-V-PKKFVIDPHNLFRAA |
| 1E3J Chain:A ((4-351)) | --DNLSAVLYKQNDLRLEQRPIPEPK-E------DEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC------AT---PPDDGNLARYYVHAAD--FCHKLPDNVS----LEEGALLE-PLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI-GDLPNVTIDCSGNEK---------------CITIGINITRTGGTLMLVGMGSQMV-------------TVPLVNACAREIDIKSVFR-YCNDYPIALEMVASGRCNV-KQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1E3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196125 for 3047 contacts (-64.4/contact) +
2D Compatibility (PS) -36099 + (NN) -9659 + (LL) 2828
1D Compatibility (HY) -18000 + (ID) 4000
Total energy: -261055.0 ( -85.68 by residue)
QMean score : 0.649
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