Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKRVVIFGGTGFIGKHIVRRLATAGYLIRVFVRNQEKAACLKLCGNLGQISIFKGDFFDEKLILESVEECNVVINLVGILYEV---KEHSFYAVHVGIAEKIARAAKIKNVSMMIHFSAMGIENS-------------KLSEYAQSKLKGEKAVTAA-----FPEAIIIKPSLVFGKEDN---FFTKFARLATILPFLPLIGSGTTKFQPICVTDLAEMVYRIINLNKQDKKIYNIGGPKIYSFKSLLKFILNVTNRKCLLVNVSFPMAKLIAFFLESRIISILLKPITGDISPMLTRDQVRVMMSSSIEK-STDFEAIKIR-PL-SIENVVPEYLKVYKKY |
| 3VPS Chain:A ((7-304)) | -KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPP----EGTGKFLEKPVLELEE--RDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRP--LPSVVNFGSGQSLSVNDVIRILQATSPAAE-VAR--------------K-----------QP-RP----NE----ITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VPS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167627 for 2273 contacts (-73.7/contact) +
2D Compatibility (PS) -28990 + (NN) -8715 + (LL) 5216
1D Compatibility (HY) -6400 + (ID) 2450
Total energy: -208966.0 ( -91.93 by residue)
QMean score : 0.477
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