Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYAEILAGGKGTRMGNVNMPKQYLPLKGKPIIVHTIEKFILNDRFEKIIIATPKDWINHTQDIIKKYIFDSRVIVIEGGTDRNETIMNGIRYVEKEFGLNEDDIIVTHDAVRPFITHRIIEENIDMALEFGSVDTVIPAVDTIVESTNHDFITDIPVRGNIYQGQTPQSFNMKTIQKHYNNLTDDEKQILTDACKICLLAGEKVKLVNGGISNIKITTPYDLKVANAIVQERINS
1VPA Chain:A ((13-231))
MNVAILLAAGKGERMSEN-VPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFH---EKVLGIVEGGDTRSQSVRSALEFLEKF----SPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVEN-D-RIEYIPRKGVYRILTPQAFSYEILKKAHEN-----GGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWE--
General information:
TITO was launched using:
RESULT:
Template:
1VPA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85616 for 1823 contacts (-47.0/contact) +
2D Compatibility (PS) -23899 + (NN) -9407 + (LL) 652
1D Compatibility (HY) -10800 + (ID) 2900
Total energy: -131970.0 ( -72.39 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_1VPA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPA-query.scw
PDB file :
Tito_Scwrl_1VPA.pdb
: