Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEDFLLSNGYQLGKTIGEGTYSKVKEAFSKKHQRKVAIKVIDKMGGPEEFIQRFLPRELQIVRTLDHKNIIQVYEMLESA-DGKICLVMELAEGGDVFDCVLNGGPLPESRAKALFRQMVEAIRYCHGCGVAHRDLKCENALLQ-GFNLKLTDFGFAKVLPKSHRELSQTFCGSTAYAAPEVLQGIP--HDSKKGDVWSMGVVLYVMLCASLPFDDTDIPKMLW-QQQKGVSFPTHLSISADCQDLLKRLLEPDMILRPSIEEVSWHPWLAST
2ZV2 Chain:A ((11-298))
-----QLNQYTLKDEIGK--YGVVKLAYNENDNTYYAMKVLSKK-------EQ-VYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP-TLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDA-LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVTR-
General information:
TITO was launched using:
RESULT:
Template:
2ZV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140280 for 1969 contacts (-71.2/contact) +
2D Compatibility (PS) -26783 + (NN) -10475 + (LL) 948
1D Compatibility (HY) -24400 + (ID) 3900
Total energy: -204890.0 ( -104.06 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_2ZV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZV2-query.scw
PDB file :
Tito_Scwrl_2ZV2.pdb
: