Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATL-------RNEALDHVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIER-PGDLATILTSL--EPGDVLFIDEIHRLSR----AIEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGATTRAGLLSAPLRDRFGVIDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPR-IANRLLKRVRDFAQVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGGPVGLDTIAASIGEERETIEDMQEPYLLQIGFLQRTPRGRIVTETAYNHLGISYEKEV |
| 3VFD Chain:A ((103-339)) | ---------------NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL--GEKLVRALFAVARELQPSIIFIDQVDSLL-DASRRLKTEFLIEFDGVQ-------------------RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE--------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VFD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99141 for 1506 contacts (-65.8/contact) +
2D Compatibility (PS) -21433 + (NN) -8593 + (LL) 9276
1D Compatibility (HY) -6000 + (ID) 1900
Total energy: -127791.0 ( -84.85 by residue)
QMean score : 0.440
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