Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI
1NHK Chain:R ((2-142))
IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIHSYPY------
General information:
TITO was launched using:
RESULT:
Template:
1NHK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66958 for 1078 contacts (-62.1/contact) +
2D Compatibility (PS) -15002 + (NN) -3196 + (LL) 672
1D Compatibility (HY) -11600 + (ID) 3450
Total energy: -99534.0 ( -92.33 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_1NHK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NHK-query.scw
PDB file :
Tito_Scwrl_1NHK.pdb
: