Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMIT-----NRGTIRIKLFPEIAPKTVENFVTHSKNGY--------YDGLIFHRVIPEFMIQGGDPD-GRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
1MZW Chain:A ((7-176))
----------SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD---------------------------WLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE-
General information:
TITO was launched using:
RESULT:
Template:
1MZW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57272 for 1238 contacts (-46.3/contact) +
2D Compatibility (PS) -16323 + (NN) -6761 + (LL) 2344
1D Compatibility (HY) -9600 + (ID) 3500
Total energy: -91112.0 ( -73.60 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_1MZW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MZW-query.scw
PDB file :
Tito_Scwrl_1MZW.pdb
: